PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462866040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 309aa    MW: 34295.4 Da    PI: 9.9692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462866040genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23163265199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 
                f+k+ltpsd++++g +++ +++a+e+       +  ++ s++l+ +d++g +W++++i+r+++++++lt +GW+ Fv++++L +gD +vF   + +++el
  462866040 163 FCKTLTPSDTSTHGGFSVLRRHANEClppldmtQ--SPPSQELVAKDLHGMEWRFRHIFRGGPRKHLLTtSGWSAFVSSKRLVAGDAFVFL--RGENGEL 258
                99****************************9543..455679***********************777659********************..449999* PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                +v+v+r+
  462866040 259 RVGVRRA 265
                ****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-38155293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-39157279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-22161264No hitNo description
SMARTSM010194.4E-25163266IPR003340B3 DNA binding domain
PfamPF023623.3E-21163265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73163266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLATAMAPSP TPEPAYQSGD QLYSDLWHAC AGPLATVPRP GDLVFYFPQG HIEQVHAAAS  60
VLPLPPRLEL ARNVRGSDSL LFRAVTLQVA VATNQVAQNQ TCLYNLPSKM LCRVLNVELK  120
AEPDTDEVYA QIMLTAEPEW RQPRRRVRSG SIATLPRPAV RSFCKTLTPS DTSTHGGFSV  180
LRRHANECLP PLDMTQSPPS QELVAKDLHG MEWRFRHIFR GGPRKHLLTT SGWSAFVSSK  240
RLVAGDAFVF LRGENGELRV GVRRAMKQLS NVPSSVISSQ SLHLEVLATA WHAINKGHMF  300
TVYYKPRNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1092030817268Auxin response factor 1
4ldy_B1e-1092030817268Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971148.11e-141PREDICTED: auxin response factor 4-like isoform X2
SwissprotQ5JK201e-135ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEZ91e-141K3XEZ9_SETIT; Auxin response factor
STRINGSi000340m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-113auxin response factor 2